Gu, Chan; Zhang, Jun; Yang, Y Isaac; Chen, Xi; Ge, Hao; Sun, Yujie; Su, Xiaodong; Yang, Lijiang; Xie, X Sunney; Gao, Yi Qin "DNA Structural Correlation in Short and Long Ranges," J Phys Chem B, 119(44), 13980–13990, DOI:10.1021/acs.jpcb.5b06217 (2015)

Chong, Shasha; Chen, Chongyi; Ge, Hao; Xie, X. Sunney. "Mechanism of Transcriptional Bursting in Bacteria," Cell 158, 314-326 DOI: (2014)

Xie, X. Sunney. "Enzyme Kinetics, Past and Present," Science 342, 1457-1459 DOI:10.1126/science.1248859 (2013)

Kim, Sangjin; Broströmer, Erik; Xing, Dong; Jin, Jianshi; Chong, Shasha; Ge, Hao; Wang, Siyuan; Gu, Chan; Yang, Lijiang; Gao, Yi Qin; Su, Xiao-dong; Sun, Yujie; Xie, X. Sunney. "Probing Allostery Through DNA," Science 339, 816-819 (2013).

Xie, X. Sunney "Enzymology and Life at the Single Molecule Level" in Single Molecule Spectroscopy in Chemistry, Physics and Biology Nobel Symposium, Edited by Astrid Graslund, et al. p. 435-448, Springer Series in Chemical Physics, Springer-Verlag Berlin Heidelberg (2010).

Min, Wei; Jiang, Liang; Xie, X. Sunney "Complex Kinetics of Fluctuating Enzymes: Phase Diagram Characterization of a Minimal Kinetic Scheme" Chem. Asian J. 5, 1129-0138 (2010)

Kim, Sangjin; Schroeder, Charles M.; Xie, X. Sunney "Single-Molecule Study of DNA Polymerization Activity of HIV-1 Reverse Transcriptase on DNA Templates" J. Mol. Biol., 395, 995-1006 (2010)

Blainey, Paul C.; Luo, Guobin; Ko9u, S.C.; Mangel, Walter F.; Verdine, Gregory L.; Bagchi, Biman; Xie, X. Sunney "Nonspecifically bound proteins spin while diffusing along DNA" Nature Structural & Molecular Biology, 16, 1224-1229 (2009)

Min, Wei; Xie, X. Sunney; Bagchi, Biman "Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibium steady state" J.Chem.Phys., 131, 065104 (2009).

Li, Jianwei Jeffery; Chu, Yizhuo; Lee, Benjamin Yi-Hung; Xie, X. Sunney "Enzymatic signal amplification of molecular beacons for sensitive DNA detection," Nucleic Acids Research, 1-17 (2008).

Min, Wei; Xie, X. Sunney; Bagchi, Biman "Two-Dimensional Reaction Free Energy Surfaces of Catalytic Reaction: Effects of Protein Conformational Dynamics on Enzyme Catalysts," J.Phys.Chem.B, 112, 454-466 (2008).

Schroeder, Charles M.; Blainey, Paul C.; Kim, Sangjin; Xie, X. Sunney "Hydrodynamic Flow-stretching Assay for Single-Molecule Studies of Nucleic Acid-Protein Interactions" in "Single Molecule Techniques A Laboratory Manual" Edited by Paul R. Selvin and Taekjip Ha, p 461-492, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 2008.

Luo, Guobin; Wang, Mina; Konigsberg, William H.; Xie, X. Sunney "Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase," PNAS, 104, 12610-12615 (2007).

Kim, Sangjin; Blainey, Paul C; Schroeder, Charles M; Xie, X. Sunney "Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA," Nature Methods, 4, 397-399 (2007).

Min, Wei; Gopich, Irina V.; English, Brian P.; Kou, Sam C.; Xie, X. Sunney.; Szabo, Attila "When Does the Michaelis-Menten Equation Hold for Fluctuating Enzymes?" J. Phys. Chem. B, 110, 20093-7 (2006).

Qian, Hong; Xie, X. Sunney "Generalized Haldane Equation and Fluctuation Theorem in The Steady-state Cycle Kinetics of Single enzymes," Phys. Rev. E, 74, 010902(R) (2006).

Luo, Guobin; Andricioaei, Ioan; Xie, X. Sunney; Karplus, Martin "Dynamic Distance Disorder in Proteins Is Caused by Trapping," J. Phys. Chem. B, 110, 9363-9367 (2006).

Blainey, Paul C.; van Oijen, Antoine M.; Banerjee, Anirban; Verdine, Gregory L.; Xie, X. Sunney "A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA," Proc. Natl. Aca. Sci., 103, 5752-5757 (2006).

Lee, Jong-Bong; Hite, Richard K.; Hamdan, Samir M.; Xie, X. Sunney; Richardson, Charles C.; van Oijen, Antoine M. "DNA primase acts as a molecular brake in DNA replication," Nature, 439, 621-624 (2006).

Min, Wei; Xie, X. Sunney "Kramers model with a power-law friction kernel: Dispersed kinetics and dynamic disorder of biochemical reactions," Phys. Rev. E 73, 010902 (2006).

English, Brian P.; Min, Wei; van Oijen, Antoine M.; Lee, Kang Taek; Luo, Guobin; Sun, Hongye; Cherayil, Binny J.; Kou, S.C.; Xie, X. Sunney "Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited," Nat. Chem. Bio., 2, 87 (2006).

Min, Wei; Jiang, Liang; Yu, Ji; Kou, S.C.; Qian, Hong; Xie, X. Sunney "Nonequilibrium Steady State of a Nanometric Biochemical System: Determining the Thermodynamic Driving Force from Single Enzyme Turnover Time Traces," Nano Lett. 5, 2373-2378 (2005).

Min, Wei; English, Brian P.; Luo, Guobin; Cherayil, Binny J.; Kou, S.C.; Xie, X. Sunney "Fluctuating Enzymes: Lessons from Single-Molecule Studies," Acc. Chem. Res. 38, 923-931 (2005).

Debnath, Pallavi; Min, Wei; Xie, X. Sunney; Cherayil, Binny J. "Multiple time scale dynamics of distance fluctuations in a semiflexible polymer: A one-dimensional generalized Langevin equation treatment," J. Chem. Phys. 123, 204903 (2005).

Kou, S.C.; Cherayil, Binny J.; Min, Wei; English, Brian P.; Xie, X. Sunney "Single-Molecule Michaelis-Menten Equations," J. Phys. Chem. B, 109, 19068-19081 (2005).

Kou, S.C.; Xie, X. Sunney; Liu, Jun S. "Bayesian Analysis of Single-molecule Experimental Data," Appl. Statist. 54, 469 (2005).

Min, Wei; Luo, Guobin; Cherayil, Binny J.; Kou, S.C.; Xie, X. Sunney "Observation of a Power-Law Memory Kernel for Fluctuations within a Single Protein Molecule," Phys. Rev. Lett. 94, 198302 (2005).

Kou, S.C. and Xie, X. Sunney "Generalized Langevin Equation with Fractional Gaussian Noise: Subdiffusion within a Single Protein Molecule ," Phys. Rev. Lett. 93, 18 (2004).

Cotlet, M.; Masuo, S.; Luo, G.B.; Hofkens, J.; Van der Auweraer, M.; Verhoeven, J.; Müllen, K.; Xie, X.S.; and De Schryver, F "Probing conformational dynamics in single donor-acceptor synthetic molecules by means of photoinduced reversible electron transfer ," Proc. Natl. Aca. Sci. 101, 14343 (2004).

Louie, Tai Man; Xie, X. S.; Xun, Luying "Coordinated Production and Utilization of FADH2 by NAD(P)H-Flavin Oxidoreductase and 4-Hydroxyphenylacetate 3-Monooxygenase," Biochemistry 42, 7509 (2003).

Yang, Haw; Luo, Guobin; Karnchanaphanurach, Pallop; Louie, Tai-Man; Rech, Ivan; Cova, Sergio; Xun, Luying; Xie, X. Sunney "Protein conformational dynamics probed by single-molecule electron transfer," Science 302, 262 (2003).

van Oijen, Atoine M. ; Blainey, Paul C. ; Crampton, Donald J. ; Richardson, Charles C. ; Ellenberger, Tom; Xie, X. Sunney "Single-Molecule Kinetics of λExonuclease Reveal Base Dependence and Dynamic Disorder," Science 301, 1235 (2003).

Xie, X. Sunney "Single-molecule approach to dispersed kinetics and dynamic disorder: Probing conformational fluctuation and enzymatic dynamics," J. Chem. Phys. 117, 11024 (2002).

Yang, Haw; Xie, X. Sunney "Probing Single Molecule Dynamics Photon by Photon, " J. Chem. Phys. 117, 10965 (2002).

Luoie, Tai Man; Yang, Haw; Karnchanaphanurach, Pallop; Xie, X. Sunney; Xun, Luying "FAD is a Preferred Substrate and an Inhibitor of Escherichia coli General NAD(P)H: flavin Oxidoreductase," J. Biol. Chem. 277, 39450 (2002).

Yang, Haw; Xie, X. Sunney "Statistical Approaches for Probing Single-molecule Dynamics Photon-by-Photon, " Chem. Phys. 284, 423 (2002).

Xie, X. Sunney "Single Molecule Approach to Enzymology," Single Molecule 4, 229 (2001).

Xie, X. Sunney; Lu, H. Peter "Single-Molecule Enzymology," J. Biol. Chem. 274, 15967 (1999).

Schenter, Greg K.; Lu, H. Peter; Xie, X. Sunney "Statistical Analysis and Theoretical Models of Single-Molecule Enzymatic Dynamics," J. Phys. Chem. A 103, 10477 (1999).

Bai, Chunli; Wang, Chen; Xie, X. Sunney; Wolynes, Peter, G. "Single Molecule Physics and Chemistry." Proc. Natl. Acad. Sci. USA 96, 11075 (1999).

Lu, H. Peter, Xun, Luying; Xie, X. Sunney "Single­Molecule Enzymatic Dynamics," Science 282, 1877 (1998).

Ying, Liming; Xie, X. Sunney "Fluorescence Spectroscopy, Excitation Dynamics and Photochemistry of Single Allophycocyanin Trimers," J. Phys. Chem. B 102, 10399 (1998).

Xie, X. Sunney; Trautman, Jay K. "Single-Molecule Optical Studies at Room Temperature," Ann. Rev. Phys. Chem. 49, 441 (1998).

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