Friedman, Nir; Cai, Long; Xie, X. Sunney "Linking Stochastic Dynamics to Population Distribution: An Analytical Framework of Gene Expression," Phys. Rev. Lett. 97, 168302 (2006).

Min, Wei; Gopich, Irina V.; English, Brian P.; Kou, Sam C.; Xie, X. Sunney.; Szabo, Attila "When Does the Michaelis-Menten Equation Hold for Fluctuating Enzymes?" J. Phys. Chem. B, 110, 20093-7 (2006).

Xie, X. Sunney; Cheng, Ji-Xin; Potma, Eric O. "Coherent Anti-Stokes Raman Scattering Microscopy" in "Handbook of Biological Confocal Microscopy" 3rd ed. Edited by James Pawley, p 595-606, Springer Science, New York, 2006.

Qian, Hong; Xie, X. Sunney "Generalized Haldane Equation and Fluctuation Theorem in The Steady-state Cycle Kinetics of Single enzymes," Phys. Rev. E, 74, 010902(R) (2006).

Nan, Xiaolin; Potma, Eric O.; Xie, X. Sunney "Nonperturbative Chemical Imaging of Organelle Transport in Living Cells with Coherent anti-Stokes Raman Scattering Microscopy," Biophys. J., 91, 728-735 (2006)

Luo, Guobin; Andricioaei, Ioan; Xie, X. Sunney; Karplus, Martin "Dynamic Distance Disorder in Proteins Is Caused by Trapping," J. Phys. Chem. B, 110, 9363-9367 (2006).

Ganikhanov, Feruz; Evans, Conor L.; Saar, Brian G.; Xie, X. Sunney "High-sensitivity vibrational imaging with frequency modulation coherent anti-Stokes Raman scattering (FM CARS) microscopy," Optics Lett., 31, 1872-1874 (2006).

Légaré, François; Evans, Conor L.; Ganikhanov, Feruz; Xie, X. Sunney "Towards CARS Endoscopy," Opt. Express,14 , 4427-4432 (2006).

Ganikhanov, Feruz; Carrasco, Silvia; Xie, X. Sunney; Katz, Mordechai; Seitz, Wolfgang; Kopf, Daniel "Broadly tunable dual-wavelength light source for coherent anti-Stokes Raman scattering microscopy," Optics Lett., 31, 1292-1294 (2006).

Xie, X. Sunney; Yu, Ji; Yang, Wei Yuan "Living Cells as Test Tubes," Science, 312, 228-230 (2006).

Blainey, Paul C.; van Oijen, Antoine M.; Banerjee, Anirban; Verdine, Gregory L.; Xie, X. Sunney "A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA," Proc. Natl. Aca. Sci., 103, 5752-5757 (2006).

Lee, Jong-Bong; Hite, Richard K.; Hamdan, Samir M.; Xie, X. Sunney; Richardson, Charles C.; van Oijen, Antoine M. "DNA primase acts as a molecular brake in DNA replication," Nature, 439, 621-624 (2006).

Rakic, Bojana; Noestheden, Matthew; Belanger, Sylvie; Nan, Xiaolin; Evans, Conor L.; Xie, X. Sunney; Pezacki, John Paul "Peroxisome Proliferator-Activated Receptor Alpha Antagonism Inhibits Hepatitis C Virus Replication Source," Chemistry and Biology, 13, 1-8 (2006).

Yu, Ji; Xiao, Jie; Ren, Xiaojia; Lao, Kaiqin; Xie, X. Sunney; "Probing Gene Expression in Live Cells, One Protein Molecule at a Time," Science, 311, 1600-1603 (2006).

Cai, Long; Friedman, Nir; Xie, X. Sunney "Stochastic protein expression in individual cells at the single molecule level," Nature, 440, 358-362 (2006).

Min, Wei; Xie, X. Sunney "Kramers model with a power-law friction kernel: Dispersed kinetics and dynamic disorder of biochemical reactions," Phys. Rev. E 73, 010902 (2006).

English, Brian P.; Min, Wei; van Oijen, Antoine M.; Lee, Kang Taek; Luo, Guobin; Sun, Hongye; Cherayil, Binny J.; Kou, S.C.; Xie, X. Sunney "Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited," Nat. Chem. Bio., 2, 87 (2006).

Potma, Eric O.; Evans, Conor L.; Xie, X. Sunney "Heterodyne coherent anti-Stokes Raman scattering (CARS) imaging," Optics Lett. 31, 241 (2006).